API reference

Click any module for detailed descriptions of available functions, usage, etc.

Trajectory statistics

stats	Statistical methods for trajectory analysis.
stats.moments(df[, cols, ns])	Take a DataFrame and optionally a list of columns of interest and for each n in ns, calculate the nth moment of each column, where the 0th moment in defined for convenience to be the count.
stats.distributions	Tools for analysis of distributional statistics of trajectories.

Finite window correction

finite_window	For correcting interior- and exterior-censored data
finite_window.stats
finite_window.simulation
finite_window.munging

Plotting

plotting

For plotting multi_locus_analysis results

Diffusion theory

analytical

For computing analytical results relevant to diffusing loci.

Fitting helpers

fitting

For fitting analytical theory to multi_locus_analysis results

Example data

examples

Data Examples, Multi-locus Analysis

Utilities

dataframes

Utilities for massaging DataFrames